Microbial diversity of a closed salt lagoon in the Puertecitos area, Upper Gulf of California

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Jessica A Kozlowski
Markes E Johnson
Jorge Ledesma-Vázquez
Daniel Birgel
Jörn Peckmann
Christa Schleper


Located 20 km south of Puertecitos on the Baja California Peninsula, Mexico, is a salt-crusted lagoon with a surface area of approximately 265,000 m2 that is isolated from the adjacent Upper Gulf of California by a 50-m wide berm. The berm rises 2 m above mean sea level extending for 530 m across the lagoon’s seaward front to bar replenishment by normal seawater except possibly by seepage. On another side of the lagoon an extinct Pliocene volcano, Volcán Prieto, marks an equally abrupt boundary delineated by basalt flows. The lagoon’s well-constrained physical geography represents a high-salinity environment under conditions of extreme aridity, flooded only during rare events associated with subtropical storms. The Volcán Prieto Lagoon (so named herein) formed through distinct stages in developmental geomorphology outlined in this study. A duplicate set of sediment cores (17 cm in length) were retrieved from the lagoon and sampled for biological associations that record high-diversity colonization and stratification of microbial mats dominated by bacteria. Small subunit ribosomal RNA gene sequencing of different horizons revealed at least 25 major named bacterial phyla and 8 major named archaeal phyla as well as several unnamed candidate taxa from miscellaneous groups. Lipid biomarker analyses of the same horizons revealed that cyanobacteria contributed significantly to biomass production only at shallow depth, whereas the lipids of anoxygenic phototrophic bacteria persisted to a depth of 15 cm, although with decreasing contents. The lipid patterns also showed that sulfate-reducing bacteria became more abundant with depth, whereas the contents of archaeal lipids increased from 1 to 5 cm depth but remained relatively constant below. Closed lagoons on the Gulf of California are widely distributed over the length of the Baja California Peninsula, but detailed taxonomic studies regarding the diverse microbial communities that colonized these extreme habitats have only begun to shed light on complex colonization patterns.

Key words: coastal processes, closed lagoons, Gulf of California, microbial assemblages, lipid biomarkers.

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Author Biography

Jessica A Kozlowski, University of Vienna

Postdoctoral Research Department of Ecogenomics and Systems Biology Archaea Biology and Ecogenomics Division